||The Best Laid Plans
||The Reds and Blues find themselves scattered across the universe as they attempt to hunt down the evil mastermind O'Malley.
||October 12, 2004
||Visiting Old Friends
||At Battle Creek, Sarge and Caboose try to escape from a bizarre battle between two groups of unknown Red and Blue soldiers.
||October 24, 2004
||Let's Get Together
||O'Malley sets his evil plans in motion, while the Reds and Blues debate their next move.
||November 8, 2004
||You're the Bomb, Yo
||Church and Grif get used to life on the inside, while Simmons and Donut make an attempt at reprogramming the teleporters.
||November 9, 2004
||Make Your Time
||The Reds and Blues must work togheder to stop O'Malley and disable the ten megaton bomb inside Church's robot body.
||November 10, 2004
||We Must Rebuild
||Grif and Simmons try to make sense of their new futuristic surroundings, while Caboose and Donut make an important discovery.
||November 21, 2004
||Sarge and Donut attempt to fix the Warthog while O'Malley, Doc and Lopez inspect their new home.
||December 6, 2004
||We're Being Watched
||O'Malley, Doc and Lopez run into an unexpected visitor. Meanwhile, the Reds intercept a transmission from an old adversary.
||It's a Biological Fact
||The Reds and Blues meet up with Tex on the beach of Zanzibar and plot ways to infiltrate O'Malley's compound.
||January 17, 2005
||Sarge and Tex lead an offensive against O'Malley, with Caboose doing some heavy lifting.
||January 23, 2005
||Church seeks help from an ancient computer, while the Reds search for Lopez's missing head.
||February 14, 2005
||Church travels back in time in an attempt to fix all his past mistakes in Blood Gulch.
||March 1, 2005
||Episode 50 Part 2
||Church discovers that the events of the past are hard to change, and even harder to believe.
||March 15, 2005
||Have We Met?
||Church's travels through time lead him into an unexpected temporal loop of confusion.
||March 22, 2005
||Let's Come to Order
||Tucker shows off his new bling while the Reds monkey about.
||March 28, 2005
||Hello, My Name Is Andrew
||The Reds debate the source of an incoming distress signal while Caboose introduces everyone to his new friend.
||April 11, 2005
||Defusing the Situation
||Church tries to placate Andy, and Grif gets the wrong idea.
||May 2, 2005
||Calm Before the Storm
||O’Malley and Lopez begin their attack... their very, very slow attack.
||May 9, 2005
||Church tries to figure out the prophecy of the “Great Destroyer” as O’Malley's Robot Army inches closer.
||May 18, 2005